Welcome to the GenomeQuest Documentation Wiki
How do I
How do I make my own workflow?
How do I change an existing workflow?
How do I plug in my own algorithm?
That depends. If you want your algorithm to run on Sequences or Alignments that a user is browsing, you might consider to write a Plug-In. If you want to do other fancy things with your algorithm, a Workflow might be better.
See When would I write a plug-in? for more.
How do I integrate with my LIMS?
Your LIMS will be providing sequence data to GenomeQuest, so you need to become familiar with:
Once you understand these concepts, the basic process is:
- transfer the data to a GQ-aware server
- format the data in an EMBL+ format with the right annotation in the right fields
- load the data into GQ with the GenomeQuest Content Manager